PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G24470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 435aa    MW: 45602.5 Da    PI: 9.1143
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G24470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP108.25.4e-34176265177
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS.............SEEETTT--SS--S-STTTT-------S-- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs.............rfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      +Cq+egC+adls ak+yhrrhkvCe h+ka+vv++sg++qrfCqqCs             rfh l+efDe+krsCr+rLa+hn+rrrk++
  ONIVA01G24470.1 176 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSrivtlwvyvhvldRFHVLTEFDEAKRSCRKRLAEHNRRRRKPA 265
                      6*********************************************944444444444445***************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.0E-33169251IPR004333Transcription factor, SBP-box
PROSITE profilePS5114128.53174264IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-32175266IPR004333Transcription factor, SBP-box
PfamPF031102.1E-24177263IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MMSGRMNAAG DESPFPFGAM QAPGPGAYVG FDHGAAAVAA AQRAGMLQHH HHHMYDGLDF  60
AAAMQFGGGQ DAPPHPQLLA LPPSMAAPPP PPMPMPLQMP MTMPMPGDVY PALGIVKREG  120
GGGGQDAAAG RIGLNLGRRT YFSPGDMLAV DRLLMRSRLG GVFGLGFGGA HHQPPRCQAE  180
GCKADLSGAK HYHRRHKVCE YHAKASVVAA SGKQQRFCQQ CSRIVTLWVY VHVLDRFHVL  240
TEFDEAKRSC RKRLAEHNRR RRKPAAAATT AVAAAKDAAA APVAAGKKPS GGAATSYTGD  300
NKNVVSMSAA KSPISSNTSV ISCLPEQGKH AAAAARPTAL TLGGAPPHES SAPQIGAMLH  360
HHHHHQQDHM QVSSLVHING GGGGGSNNIL SCSSVCSSAL PSTATNGEVS DQNNDNSHNN  420
GGNNNNMHLF EVDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-281772631184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246263KRSCRKRLAEHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642406.10.0PREDICTED: squamosa promoter-binding-like protein 10
SwissprotA2YFT90.0SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE80.0SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLA0A0E0FP210.0A0A0E0FP21_ORYNI; Uncharacterized protein
STRINGBGIOSGA023408-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os06g44860.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.15e-42squamosa promoter binding protein-like 8